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Students Needed: 2 students for 1-2 semesters
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Project Available
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This project centers around logic design and simulation. The basic idea is to design a central controller that can play as an interface between a computer host and a special purpose system for particular applications. The special purpose system is either predesigned or is a hardware simulation program of the design. The student working on this project will use C programming language for programming and actual digital component for design of the central controller.
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Students Needed: 3 students for 2 semesters
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Project Available
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Project involves analysis of all kinds of bio and medical data including, but not limited to, medical images (x-ray, ultrasound, and MRI), and DNA.
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Students Needed: 1 student for 2 semesters
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Project Available
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Bioinformatics is a field of computer science that was born from the Genetic revolution. Bioinformatics melds computer science application development and biology to create solutions for many topics including the analysis of DNA sequences, genes, protein structures, protein folding, cellular system and other topics. Microarrays are devices used to do large scale genetic analysis. These devices are able to produce tens of thousands of pieces of information, all of which need to be manipulated in a controlled environment. These applications require advanced levels of automated testing to effectively control software quality. Advanced testing techniques for an application that works with such large data sets is the central focus of this project.
Topics that could be covered are automated unit testing with JUnit, the creation of Regression suites (for integration testing and unit testing), creation of test databases as well as other topics. An intermediate knowledge of Java programming and J2BC is preferred. Knowledge of JUnit, Automated Testing / Regression suite techniques is a plus but not required.
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Students Needed: 1 student for 2 semesters
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Project Available
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Bioinformatics is a field of computer science that was born from the Genetic revolution. Bioinformatics melds computer science application development and biology to create solutions for many topics including the analysis of DNA sequences, genes, protein structures, protein folding, cellular system and other topics. Microarrays are devices used to do large scale genetic analysis. These devices are able to produce tens of thousands of pieces of information, all of which need to be manipulated in a controlled environment. To effectively communicate application output, portable and easy to understand representations of data need to be created to represent very large sets of data. The focus of this project will be to create HTML reporting and associated graphics, programmatically, in a way that best represents data from analysis on Microarray populations. An intermediate knowledge of Java programming and HTML preferable, but not required. Knowledge of Java 2D API and JavaScript is helpful but not required.
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Students Needed: 1 student for 2 semesters
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Project Full
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Students will work on a novel approach to exploratory analysis of genome data through visualization. They will help design the visual interface for the genome navigation and correlative analysis. Tools they develop will be both analysis tools and database access tools. Some students will help develop methods to ingest bioinformatics data, launch comparative analyses, retrieve and compare results, and track annotations made by scientists using the system.
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